AAI-based medoid clustering
The AAI clusters provide a good overview of the above-species structure of the datasets and facilitate taxonomic classification.
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AAI clade 1
medoid: Thermosulfidibacter takaii ABI70S6 GCF 001547735 1
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AAI clade 2
medoid: Longibacter salinarum GCF 002554795 1
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AAI clade 2-1
medoid: Dissulfurispira thermophila GCA 014701235 1
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AAI clade 2-2
medoid: Abiotrophia defectiva ATCC 49176 GCA 000160075 2
4 datasets: Acaricomes phytoseiuli DSM 14247 GCA 000376245 1 (AAI: 40.15%), Armatimonas rosea GCA 014202505 1 (AAI: 40.29%), Abiotrophia defectiva ATCC 49176 GCA 000160075 2 (AAI: 100.0%), and Acholeplasma equifetale ATCC 29724 GCA 000687735 1 (AAI: 42.63%)
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AAI clade 2-3
medoid: Dictyoglomus thermophilum H 6 12 GCA 000020965 1
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AAI clade 2-1
medoid: Dissulfurispira thermophila GCA 014701235 1
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AAI clade 3
medoid: Candidatus Pyrohabitans jungbluthii GCA 002010065 2