Search results (37)


Metagenome-Assembled Genomes for “ <i>Candidatus</i> Phormidium sp. Strain AB48” and Co-occurring Microorganisms from an Industrial Photobioreactor Environment

Citation
Noonan et al. (2022). Microbiology Resource Announcements
Names
Ca. Phormidium
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
Here, we report metagenome-assembled genomes for “ Candidatus Phormidium sp. strain AB48” and three cooccurring microorganisms from a biofilm-forming industrial photobioreactor environment, using the PacBio sequencing platform. Several mobile genetic elements, including a double-stranded DNA phage and plasmids, were also recovered, with the potential to mediate gene transfer within the biofilm community.

Draft Genome Sequence of “ <i>Candidatus</i> Nardonella dryophthoridicola” Strain NARMHE1, Endosymbiont of Metamasius hemipterus (Coleoptera, Curculionidae, Dryophthorinae)

Citation
Palmieri et al. (2022). Microbiology Resource Announcements 11 (11)
Names
Ca. Nardonella dryophthoridicola
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
Here, we report the draft genome and annotation of “ Candidatus Nardonella dryophthoridicola” strain NARMHE1, obtained via Oxford Nanopore sequencing of the ovaries of its host, the weevil Metamasius hemipterus , from a population from southeast Brazil.

Draft Genome Sequence of a Washington Isolate of “ <i>Candidatus</i> Phytoplasma pruni”

Citation
Wright, Harper (2022). Microbiology Resource Announcements
Names
Ca. Phytoplasma pruni
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
Illumina sequencing of a Prunus avium tree with X-disease symptoms was performed to obtain a draft genome of “ Candidatus Phytoplasma pruni.” The genome consists of 14 contigs covering 588,767 bp. This is the first metagenome to be sequenced from the current X-disease epidemic in stone fruit in the Pacific Northwest.

Draft Genome Sequences of Nine “ <i>Candidatus</i> Nanosynbacter sp. HMT-352” Strains Cultured from the Human Oral Cavity

Citation
Liu et al. (2022). Microbiology Resource Announcements 11 (8)
Names
Ca. Saccharibacteria Ca. Nanosynbacter
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
Here, we report draft genome sequences for nine strains of “ Candidatus Nanosynbacter sp. HMT-352.” These strains and their sequences were used to interrogate strain-level variations in host range, gene content, and growth dynamics among the phylum “ Candidatus Saccharibacteria.”

Complete Genome Sequence of “ <i>Candidatus</i> Nanosynbacter” Strain HMT-348_TM7c-JB, a Member of <i>Saccharibacteria</i> Clade G1

Citation
Baker (2022). Microbiology Resource Announcements 11 (5)
Names
Ca. Nanosynbacter
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
Saccharibacteria are abundant and diverse members of the human oral microbiome; however, they are poorly understood and appear to exhibit an epibiont/parasitic lifestyle dependent on host bacteria. Here, a complete metagenome-assembled genome (MAG) sequence of an organism from Saccharibacteria clade G1 human microbial taxon (HMT) 348 is reported, strain HMT-348_TM7c-JB.

Genome Sequence of a New “ <i>Candidatus</i> ” Phylum “Dependentiae” Isolate from Chiba, Japan

Citation
Takemura (2022). Microbiology Resource Announcements 11 (2)
Names
Ca. Dependentiae
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
Little is known about the bacterial phylum “ Candidatus Dependentiae,” because only three isolates have been reported. Here, I report the isolation and genome sequencing of a new member of this phylum, strain Noda2021. This is the fourth strain isolated from the phylum “ Candidatus Dependentiae.”

Complete Genome Sequence of Human Oral Saccharibacterium “ <i>Candidatus</i> Nanosynbacter sp. HMT352” Strain KC1

Citation
Cross et al. (2022). Microbiology Resource Announcements 11 (2)
Names
Ca. Nanosynbacter
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
“Cand. Nanosynbacter sp. HMT352” strain KC1 is an ectoparasitic saccharibacterium/TM7 that was co-isolated from a human saliva sample with its obligate bacterial host, Schaalia odontolytica . The genome of strain KC1 enables studies of the mechanisms and evolution of interspecies interactions and, for oral species, studies of their potential roles in health and disease.

Complete Genome Sequence of “ <i>Candidatus</i> Hydrogeosomobacter endosymbioticus,” an Intracellular Bacterial Symbiont of the Anaerobic Ciliate Scuticociliate GW7

Citation
Shiohama et al. (2022). Microbiology Resource Announcements 11 (2)
Names
Ca. Hydrogenosomobacter endosymbioticus
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
The bacterium “ Candidatus Hydrogenosomobacter endosymbioticus” is an intracellular symbiont of anaerobic scuticociliate GW7, which is associated with hydrogenosome together with methanogenic archaea. Here, we report a complete genome sequence of the symbiont consisting of 827 kbp. Knowing this sequence would contribute to the understanding of the metabolic interactions and evolution of the tripartite symbiosis.

Draft Genome Sequence of Schaalia odontolytica Strain ORNL0103, a Basibiont of “ Candidatus Saccharibacteria” HMT352

Citation
Podar et al. (2021). Microbiology Resource Announcements 10 (44)
Names
Ca. Saccharibacteria
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
Here, we report the draft, nearly complete genome sequence of the human oral actinobacterium Schaalia odontolytica strain ORNL0103, which was isolated in association with “ Candidatus Saccharibacteria” HMT352 strain ORNL0105. The genome was sequenced using a combination of Pacific Biosciences and Illumina platforms and encodes 1,948 proteins and 60 RNAs.

Metagenome Assembly and Metagenome-Assembled Genome of “ Candidatus Aramenus sulfurataquae” from Thermal Sediments from the Los Azufres Volcanic Complex

Citation
Marín-Paredes et al. (2021). Microbiology Resource Announcements 10 (39)
Names
Ca. Aramenus sulfurataquae
Subjects
Genetics Immunology and Microbiology (miscellaneous) Molecular Biology
Abstract
A plethora of hot springs are found at the Los Azufres volcanic complex in Mexico, and studies are needed to determine their microbial genomic diversity. Here, we report a metagenome of hot spring sediments and a metagenome-assembled genome of “ Candidatus Aramenus sulfurataquae.” This study reveals novel genomic sequences of Sulfolobales archaea.