“Aquidulcis frankliniae”

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Citation

Formal styling
“Aquidulcis frankliniae” Rodriguez-R et al., 2020
Proposed by
Rodriguez-R et al., 2020
Status
Automated discovery

Nomenclature

Rank
Species
Syllabication
frank.li'ni.ae
Etymology
N.L. fem. gen. n. frankliniae, of Franklin, in honor of the English chemist Rosalind Elsie Franklin, whose work was pivotal on the understanding of the DNA structure
Nomenclatural type
NCBI Assembly: GCA_009925905.1

Taxonomy

Description
Aerobic photoheterotrophs encoding rhodopsins tuned for green-light absorption. The genome WB4_1_0576 has 1.2 Mbp in length in 154 contigs (N50: 15.5 kbp) with 61.9% G+C content, including 1,272 predicted proteins, as well as 45 tRNA and 3 rRNA loci. The estimated genome coding density is 95.5% and the complete genome is estimated to be 1.5 Mbp. Based on genome annotation, it is predicted to have bacillus or coccobacillus morphology and possibly stain Gram positive. The type material is the genome WB4_1_0576, deposited in NCBI databases with Genome Accession RFPZ00000000 and BioSample SAMN10222820.
Classification
Bacteria » Chloroflexota » Candidatus Limnocylindria » Candidatus Limnocylindrales » Candidatus Limnocylindraceae » “Aquidulcis” » “Aquidulcis frankliniae”
Parent
“Aquidulcis”

Genomics

Accession
NCBI Assembly: GCA_009925905.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 85.8%
  • Contamination: 0.0%
  • Quality: 85.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
14.3 ×
Source
Other features
  • G+C Content: 61.83%
  • Coding Density: 95.46%
  • Codon Table: 11
  • N50: 15,495 bp
  • Contigs: 154
  • Assembly Length: 1,233,219 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Metadata

Outside links
Search sequences
Local history
This name was last modified 3 months ago
Registered by
miguel about 1 year ago

Publications (1)

Citation Title
Rodriguez-R et al., 2020, Environmental Microbiology Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences
Proposed this name


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