JSONPDF

“Allofontibacter lacus”

This name was automatically created through literature mining, and it currently has no standing or validity.
Authors of original publications are encouraged to claim the name and submit it for validation
Login or Signup to claim this name.

Citation

Formal styling
“Allofontibacter lacus” corrig. Tsementzi et al., 2019
Effective publication
Tsementzi et al., 2019
Corrigendum
Oren, Garrity, 2021 from “Candidatus Fonsibacter lacus” (sic)
SeqCode status
Automated discovery
Cannonical URL
https://seqco.de/i:454

Nomenclature

Rank
Species
Syllabication
la'cus
Etymology
L. gen. n. lacus, of a lake
Nomenclatural type
INSDC Nucleotide: RGRP00000000.1

Taxonomy

Description
We propose to name PEL1, the most complete and persistent genomospecies of clade IIIb in the freshwater ecosystems sample, as Allofontibacter lacus sp. nov. [formerly "Candidatus Fonsibacter lacus"]. In addition to the previously described properties of the genus Allonsibacter corrig. Henson, et al (2018), the proposed species is described as follows. Small, curved rod cells of approximately 1 × 0.2 μm. Partial genome sequence WB8_6_001 with estimated completeness of 77.5% and contamination of 0.9% is 1.08 Mbp in size, with 1375 predicted genes, a coding density of 92.0%, and a G + C content of 35.9%. WB8_6_001 has an ANI of 84.9% and AAI of 87.0% with the Allofontibacter communis corrig. Henson et al (2018) [formerly "Ca. Fonsibacter ubiquis"] str. LSUCC0530T genome, the only currently described member of the Allofontibacter genus. The type material for this species is the genome WB8_6_001, identified in the freshwater lakes along the Chattahoochee River, Southeast USA. The representative genome is available in GenBank under accession number SAMN10223538.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Candidatus Pelagibacterales » Candidatus Pelagibacteraceae » Candidatus Allofontibacter » “Allofontibacter lacus”
Parent
Candidatus Allofontibacter gtdb

Genomics

Accession
INSDC Nucleotide:RGRP00000000.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 81.1%
  • Contamination: 0.9%
  • Quality: 76.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 9 amino acids
Other features
  • G+C Content: 35.94%
  • Coding Density: 92.02%
  • Codon Table: 11
  • N50: 7,201 bp
  • Contigs: 225
  • Largest Contig: 52,290 bp
  • Assembly Length: 1,080,034 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Excubia bot almost 5 years ago

Publications
2

Citation Title
Oren, Garrity, 2021, International Journal of Systematic and Evolutionary Microbiology Candidatus List No. 2. Lists of names of prokaryotic Candidatus taxa
Corrigendum
Tsementzi et al., 2019, Systematic and Applied Microbiology Ecogenomic characterization of widespread, closely-related SAR11 clades of the freshwater genus “Candidatus Fonsibacter” and proposal of Ca. Fonsibacter lacus sp. nov
Effective publication


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license