Poriferisodalis multihospitum^Ts

Citation

Formal styling

Poriferisodalis multihospitum^Ts Nguyen et al., 2023

Effective publication

Nguyen et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:v1sky3wb (validated)

Cannonical URL

https://seqco.de/i:23660

Nomenclature

Rank

Species

Syllabication

mul.ti.hos.pi'tum

Etymology

L. masc. adj. multus, numerous; L. masc. n. hospes, a host; N.L. masc. adj. multihospitum, one who lives with multiple hosts

Nomenclatural type

NCBI Assembly: GCA_028278755.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Sponge symbiont found in many sponges species and predict to be a facultatively aerobic chemoorganoheterotroph and capable of assimilating nitrogen, sulfur, and carbon from diverse sources.

Classification

Bacteria » Actinomycetota » Acidimicrobiia » Acidimicrobiales » Poriferisodalaceae » Poriferisodalis » Poriferisodalis multihospitum^Ts

Parent

Poriferisodalis

Genomics

Accession

NCBI Assembly:GCA_028278755.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.88%
• Contamination: 1.71%
• Quality: 83.33

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 80.0%)
• 1 23S rRNA (up to 67.0%)
• tRNAs for 20 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN31047477

Other features

• G+C Content: 67.2%
• Coding Density: 92.15%
• Codon Table: 11
• N50: 12,288 bp
• Contigs: 360
• Largest Contig: 79,380 bp
• Assembly Length: 3,142,008 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

We have not be able to reconstruct a better 16S rRNA gene sequence, but phylogenetic placement of the 16S rRNA gene is robust (see Nguyen et al., 2023).

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_028278755.1
• Global Biodiversity Information Facility (GBIF)

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified 8 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Thomas, Torsten over 1 year ago

Submitted by

Thomas, Torsten 8 months ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike 8 months ago

Validated by

Palmer, Marike 8 months ago