Ochrobactrum gambitense

Citation

Formal styling

Ochrobactrum gambitense Díaz Rodríguez et al., 2022

Effective publication

Díaz Rodríguez et al., 2022

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xwx6hrsf (validated)

Cannonical URL

https://seqco.de/i:23485

Nomenclature

Rank

Species

Syllabication

gam.bi.ten'se

Etymology

N.L. neut. adj. gambitense, of Gambita, the municipally where soil samples were taken to select the minimal lignocellulolytic bacterial consortium "MELMC"

Nomenclatural type

INSDC Nucleotide: CP098020

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species is established on the basis of MiGA taxonomic novelty analysis, and the type material is the genome MAG4.

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Brucellaceae » Ochrobactrum » Ochrobactrum gambitense

Parent

Ochrobactrum

Genomics

Accession

INSDC Nucleotide:CP098020

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 90.0%
• Contamination: 0.0%
• Quality: 90.0

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 42 amino acids

Sequencing depth

62.0 ×

Source

• BioSample: SAMN28659272

Other features

• G+C Content: 57.2%
• Coding Density: 86.64%
• Codon Table: 11
• N50: 2,526,949 bp
• Contigs: 1
• Largest Contig: 2,526,949 bp
• Assembly Length: 2,526,949 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• Global Biodiversity Information Facility (GBIF)

Search sequences

• NCBI Nucleotide

Local history

• This name was last modified over 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Jimenez, Diego almost 2 years ago

Submitted by

Jimenez, Diego over 1 year ago

Curators

• Chuvochina, Maria (nomenclature)
• Palmer, Marike

Endorsed by

Palmer, Marike over 1 year ago

Validated by

Palmer, Marike over 1 year ago