Ochrobactrum gambitense


Citation

Formal styling
Ochrobactrum gambitense Díaz Rodríguez et al., 2022
Proposed by
Díaz Rodríguez et al., 2022
Status
Valid (SeqCode)
Register List
seqco.de/r:xwx6hrsf (validated)
Cannonical URL
https://seqco.de/i:23485

Nomenclature

Rank
Species
Syllabication
gam.bi.ten'se
Etymology
N.L. neut. adj. gambitense, of Gambita, the municipally where soil samples were taken to select the minimal lignocellulolytic bacterial consortium "MELMC"
Nomenclatural type
INSDC Nucleotide: CP098020
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species is established on the basis of MiGA taxonomic novelty analysis, and the type material is the genome MAG4.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Brucellaceae » Ochrobactrum » Ochrobactrum gambitense
Parent
Ochrobactrum

Genomics

Accession
INSDC Nucleotide: CP098020
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.0%
  • Contamination: 0.0%
  • Quality: 90.0
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 42 amino acids
Sequencing depth
62.0 ×
Source
Other features
  • G+C Content: 57.2%
  • Coding Density: 86.64%
  • Codon Table: 11
  • N50: 2,526,949 bp
  • Contigs: 1
  • Assembly Length: 2,526,949 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
djimenez over 1 year ago
Submitted by
djimenez about 1 year ago
Endorsed by
MarikePalmer 12 months ago
Validated by
MarikePalmer 12 months ago

Publications (1)

Citation Title
Díaz Rodríguez et al., 2022, ISME Communications Novel bacterial taxa in a minimal lignocellulolytic consortium and their potential for lignin and plastics transformation
Proposed this name



© 2022-2023 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license