Geocrenenecus huangii


Citation

Formal styling
Geocrenenecus huangii Buessecker et al., 2022
Proposed in
Buessecker et al., 2022
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:slp2ijs4 (validated)
Cannonical URL
https://seqco.de/i:22825

Nomenclature

Rank
Species
Syllabication
huang'i.i
Etymology
N.L. gen. n. huangii, of Huang, named for the Chinese microbiologist, Prof. Li Huang (1958-), for his contributions to the study of virus ecology and taxonomic classification in hot springs
Nomenclatural type
NCBI Assembly: GCA_023254095.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Twelve MAGs for this organism were recovered from metagenomes of thermal springs in the Rehai and Ruidian geothermal fields, Tengchong, Yunnan, China. The binned MAGs ranged between 1,361,286 bp and 1,697,407 bp, in 21 to 174 contigs, with a G+C content of 40.5 to 40.7 %. Genome completeness estimates were between 91.3 and 98.1 %, with contamination estimated at 0.97 to 1.46 % based on CheckM. Robust phylogenomic analysis based on 122 archaeal markers places this taxon in the genus Geocrenenecus, in the family Wolframiiraptoraceae. Intraspecific ANI values all range between 99.3 and 100 %, while all other comparisons to other members within the genus range between 75 and 90 %. Like other members of the genus, several AORs were identified in the genomes of this species, with a GAPOR-like encoding gene in all members of the species. The presence of genes encoding some cytochrome C oxidase subunits (coxA/B), cytochrome bd ubiquinol oxidase subunit I (cydA), and the aerobic carbon-monoxide dehydrogenase large subunit (coxL), suggest that members of this species may be capable of aerobic respiration. 
Classification
Incertae sedis (Archaea) » “Caldarchaeales” » Wolframiiraptoraceae » Geocrenenecus » Geocrenenecus huangii
Parent
Geocrenenecus gtdb

Genomics

Accession
NCBI Assembly:GCA_023254095.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.06%
  • Contamination: 0.97%
  • Quality: 93.21
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 44.0%)
  • 2 23S rRNAs (up to 54.0%)
  • tRNAs for 20 amino acids
Sequencing depth
150.0 ×
Other features
  • G+C Content: 40.7%
  • Coding Density: 87.94%
  • Codon Table: 11
  • N50: 115,798 bp
  • Contigs: 32
  • Largest Contig: 240,564bp
  • Assembly Length: 1,609,249 bp
  • Ambiguous Assembly Fraction: 0.031%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike over 2 years ago
Submitted by
Palmer, Marike over 1 year ago
Curators
Validated by
Rodriguez-R, Luis M over 1 year ago

Publications
1

Citation Title
Buessecker et al., 2022, Nature Communications An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea
Proposed this name



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