JSONPDF

Benthortus lauensisTs

Citation

Formal styling
Benthortus lauensisTs Buessecker et al., 2022
Effective publication
Buessecker et al., 2022
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:slp2ijs4 (validated)
Cannonical URL
https://seqco.de/i:22820

Nomenclature

Rank
Species
Syllabication
lau.en'sis
Etymology
N.L. masc. adj. lauensis, of Lau, referring to the Lau Basin in the Western Pacific, where this organism was identified from
Nomenclatural type
NCBI Assembly: GCA_021650775.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The MAG of this organism was recovered from metagenomic sequencing data of a deep-water hydrothermal sulfide deposit sample taken from the Lau Basin, in the Western Pacific. The binned genome of this organism is 1,470,116 bp in size, and consists of 112 contigs, with a G+C content of 54.8 %. CheckM-based quality assessment indicates a completeness of 94.0 % and a contamination estimate of 2.91 %. Phylogenomic reconstruction based on 122 conserved archaeal genes place this taxon in the family Wolframiraptoraceae. Only two putative tungsten-dependent AORs were predicted within the genome of this organism 
Classification
Incertae sedis (Archaea) » “Caldarchaeales” » Wolframiiraptoraceae » Benthortus » Benthortus lauensisTs
Parent
Benthortus gtdb

Genomics

Accession
NCBI Assembly:GCA_021650775.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.0%
  • Contamination: 2.94%
  • Quality: 79.3
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
34.0 ×
Source
Other features
  • G+C Content: 54.8%
  • Coding Density: 93.81%
  • Codon Table: 11
  • N50: 19,743 bp
  • Contigs: 112
  • Largest Contig: 63,947 bp
  • Assembly Length: 1,470,116 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike over 2 years ago
Submitted by
Palmer, Marike over 1 year ago
Curators
Validated by
Rodriguez-R, Luis M over 1 year ago

Publications
1

Citation Title
Buessecker et al., 2022, Nature Communications An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea
Effective publication


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license