JSONPDF

Hepatobacter penaeiTs

Citation

Formal styling
Hepatobacter penaeiTs Nunan et al., 2013 (valid 2023)
Effective publication
Nunan et al., 2013
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:4eldu-g9 (validated)
Cannonical URL
https://seqco.de/i:121

Nomenclature

Rank
Species
Syllabication
pe.nae'i
Etymology
N.L. gen. n. penaei, of the prawn genus Penaeus
Nomenclatural type
NCBI Assembly: GCA_000742475.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Nunan et al., 2013: Obligate intercellular pathogen of Penaeus vannamei, the Pacific white shrimp, that cannot be cultivated in cell-free media. The geographic range is limited to the western hemisphere. The Gram-negative organism is motile by means of eight flagella located at the basal apex. The bacteria present two morphological variants consisting of a rod-shaped organism (0.25 by 0.9 μm) and a helical form (0.25 by 2 to 3.5 μm). Phylogenetic analysis, inferred from 16S rRNA and gyrase B gene sequences, places this bacterium within the class Alphaproteobacteria.
Notes
Reasoning of exclusion for validation under the ICNP:
"Although many techniques have been used over the years to characterize the causative pathological agent of NHP, the obligate intracellular nature of the bacteria has prevented the unequivocal isolation of the strain." Nunan et al. 2013
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Holosporales » “Hepatobacteraceae” » Hepatobacter » Hepatobacter penaeiTs
Parent
Hepatobacter gtdb

Genomics

Accession
NCBI Assembly:GCA_000742475.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 91.94%
  • Contamination: 0.0%
  • Quality: 91.94
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
927.0 ×
Source
Other features
  • G+C Content: 49.75%
  • Coding Density: 89.38%
  • Codon Table: 11
  • N50: 334,235 bp
  • Contigs: 5
  • Largest Contig: 376,171 bp
  • Assembly Length: 1,115,609 bp
  • Ambiguous Assembly Fraction: 0.083%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria 9 months ago
Submitted by
Chuvochina, Maria 8 months ago
Curators
Endorsed by
Palmer, Marike 9 months ago
Validated by
Rodriguez-R, Luis M 8 months ago

Publications
2

Citation Title
Leyva et al., 2017, Revista de biología marina y oceanografía Análisis bioinformático del sistema flagelar de la alphaproteobacteria tipo rickettsia Candidatus Hepatobacter penaei
Nunan et al., 2013, Applied and Environmental Microbiology “Candidatus Hepatobacter penaei,” an Intracellular Pathogenic Enteric Bacterium in the Hepatopancreas of the Marine Shrimp Penaeus vannamei (Crustacea: Decapoda)
Effective publication


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license