JSON

Genome sc|0000071

Name

Ochrobactrum gambitense

Database

INSDC Nucleotide

Accession

CP098020

Genomics

Accession
INSDC Nucleotide:CP098020
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.0%
  • Contamination: 0.0%
  • Quality: 90.0
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 42 amino acids
Sequencing depth
62.0 ×
Source
Other features
  • G+C Content: 57.2%
  • Coding Density: 86.64%
  • Codon Table: 11
  • N50: 2,526,949 bp
  • Contigs: 1
  • Largest Contig: 2,526,949 bp
  • Assembly Length: 2,526,949 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: not available
Location
Lat Lon: 5.931 N 73.304 W
Toponym
Geo Loc Name: Colombia:Gambita
Environment
Isolation Source: decomposition metagenome
Env Broad Scale: ENVO:00002261
Env Local Scale: ENVO:00002261
Env Medium: ENVO:00001998
Other
Not detected
Package
Ncbi Submission Package: MIMAG.5.0
Biosamplemodel: MIMAG
Additional Accessions
SAMN28657967, SAMN28657968, SAMN28657969
All retrieved samples
Metadata retrieved 4 months ago


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