Genome sc|0000066

Genomics

Accession

NCBI Assembly:GCA_023539445.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.11%
• Contamination: 0.0%
• Quality: 96.11

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

80.0 ×

Source

• SRA: SRX13914731

Other features

• G+C Content: 46.1%
• Coding Density: 91.76%
• Codon Table: 11
• N50: 105,389 bp
• Contigs: 35
• Largest Contig: 241,502 bp
• Assembly Length: 1,158,832 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2019

Location

Lat Lon: 44.56097 N 110.83286 W

Toponym

Geo Loc Name: USA: Yellowstone National Park

Environment

Isolation Source: hot spring sediment from LGB-05 spring

Env Broad Scale: ENVO:00000051

Env Local Scale: ENVO:0000207

Env Medium: ENVO:0000207

Other

Depth: 1-20 cm

Package

Ncbi Submission Package: MIMS.me.sediment.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment

All retrieved samples

• SRS11765384: MIMS Environmental/Metagenome sample from hot springs metagenome

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Metadata retrieved 4 months ago