Genome sc|0000452

Genomics

Accession

NCBI Assembly:GCA_002117145.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.55%
• Contamination: 0.2%
• Quality: 95.55

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

1700.0 ×

Source

• BioSample: SAMN02840763

Other features

• G+C Content: 39.72%
• Coding Density: 90.38%
• Codon Table: 11
• N50: 1,838,212 bp
• Contigs: 1
• Largest Contig: 1,838,212 bp
• Assembly Length: 1,838,212 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

checkM2

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2011-03-01

Location

Lat Lon: 53.5653 N 10.0014 E

Toponym

Geo Loc Name: Germany: Hamburg

Environment

Env Material: wastewater

Env Biome: wastewater

Other

Host: Hartmannella sp. FS5

Package

Ncbi Submission Package: MIGS.ba.host-associated.5.0

Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN02840763: MIGS Cultured Bacterial/Archaeal sample from Candidatus Nucleicultrix amoebiphila FS5

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Metadata retrieved 4 months ago