Genome sc|0000451

Genomics

Accession

NCBI Assembly:GCA_002869225.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.56%
• Contamination: 3.5%
• Quality: 79.06

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Source

• BioSample: SAMN07982665
• BioSample: SAMN07138186
• BioSample: SAMN07138185

Other features

• G+C Content: 32.77%
• Coding Density: 92.06%
• Codon Table: 11
• N50: 33,603 bp
• Contigs: 148
• Largest Contig: 182,030 bp
• Assembly Length: 2,928,565 bp
• Ambiguous Assembly Fraction: 0.0055%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2015

Location

Lat Lon: 37.8629 N 122.3132 W

Toponym

Geo Loc Name: USA: Berkeley, CA, marina

Environment

Sample Type: metagenomic assembly

Isolation Source: enrichment from estuary sediment • estuary sediment; 7% salinity (w/v NaCl) perchlorate enrichment • estuary sediment; 5% salinity (w/v NaCl) perchlorate enrichment

Other

Rel To Oxygen: anaerobe

Package

Ncbi Submission Package: Microbe.1.0

Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental

All retrieved samples

• SAMN07982665: Microbe sample from Candidatus Muirbacterium halophilum
• SAMN07138186: Metagenome from 7% salinity (w/v NaCl) perchlorate enrichment
• SAMN07138185: Metagenome from 5% salinity (w/v NaCl) perchlorate enrichment

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Metadata retrieved 4 months ago