Genome sc|0000448

Genomics

Accession

NCBI Assembly:GCA_001899175.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.99%
• Contamination: 0.0%
• Quality: 96.99

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN05660602
• BioSample: SAMN05389826

Other features

• G+C Content: 59.43%
• Coding Density: 92.0%
• Codon Table: 11
• N50: 375,615 bp
• Contigs: 28
• Largest Contig: 951,664 bp
• Assembly Length: 3,272,986 bp
• Ambiguous Assembly Fraction: 0.014%

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2014-04-04

Location

Lat Lon: 33.9575 S 18.4606 E

Toponym

Geo Loc Name: South Africa: University of Cape Town

Environment

Env Material: biofilm

Sample Type: metagenomic assembly • Biofilm

Env Biome: Bioreactor

Isolation Source: Thiocyanate ramp bioreactor • Thiocyanate bioreactor

Other

Not detected

Package

Ncbi Submission Package: MIMS.me.wastewater.5.0 • Metagenome.environmental.1.0

Biosamplemodel: MIGS/MIMS/MIMARKS.wastewater • Metagenome or environmental

All retrieved samples

• SAMN05660602: SCN_T4_BF
• SAMN05389826: Thiocyanate reactor biofilm T4 metagenome from two-reactor ramp experiment

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Metadata retrieved 4 months ago