JSON

Genome sc|0000413

Name

Pantoea deserta

Database

NCBI Assembly

Accession

GCF_003813865.1

Genomics

Accession
NCBI Assembly:GCF_003813865.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.99%
  • Contamination: 0.28%
  • Quality: 98.59
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
57.0 ×
Source
Other features
  • G+C Content: 56.96%
  • Coding Density: 86.71%
  • Codon Table: 11
  • N50: 221,699 bp
  • Contigs: 68
  • Largest Contig: 565,900 bp
  • Assembly Length: 5,010,327 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2015
Location
Not detected
Toponym
Geo Loc Name: Nigeria
Environment
Sample Type: cell culture
Other
Host: Distemonanthus benthamianus
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


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