JSON

Genome sc|0000412

Name

Pantoea alvi

Database

NCBI Assembly

Accession

GCF_002920175.1

Genomics

Accession
NCBI Assembly:GCF_002920175.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.99%
  • Contamination: 0.18%
  • Quality: 99.09
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
72.0 ×
Source
Other features
  • G+C Content: 57.91%
  • Coding Density: 86.24%
  • Codon Table: 11
  • N50: 347,536 bp
  • Contigs: 70
  • Largest Contig: 524,186 bp
  • Assembly Length: 5,351,126 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2015
Location
Lat Lon: 38.984652 N 77.094709 W
Toponym
Geo Loc Name: USA
Environment
Env Biome: human-associated habitat
Other
Not detected
Package
Ncbi Submission Package: MIGS.ba.5.0
Biosamplemodel: MIGS.ba
All retrieved samples
Metadata retrieved 4 months ago


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