JSON

Genome sc|0000408

Name

Pantoea floridensis

Database

NCBI Assembly

Accession

GCA_900215435.1

Genomics

Accession
NCBI Assembly:GCA_900215435.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.19%
  • Quality: 99.05
Ribosomal and transfer RNA genes
  • 7 16S rRNAs (up to 100.0%)
  • 7 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
70.0 ×
Source
Other features
  • G+C Content: 53.52%
  • Coding Density: 87.72%
  • Codon Table: 11
  • N50: 4,409,457 bp
  • Contigs: 5
  • Largest Contig: 4,409,457 bp
  • Assembly Length: 5,453,142 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Lat Lon: 28.7109 N 81.4862 W
Toponym
Geo Loc Name: USA: Florida, Wekiwa Springs State Park
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package: MIGS.ba.5.0
Biosamplemodel: MIGS.ba
All retrieved samples
Metadata retrieved 4 months ago


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