JSON

Genome sc|0000406

Name

Pantoea symbiotica

Database

NCBI Assembly

Accession

GCF_900114175.1

Genomics

Accession
NCBI Assembly:GCF_900114175.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.84%
  • Contamination: 0.91%
  • Quality: 95.29
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
273.0 ×
Source
Other features
  • G+C Content: 54.57%
  • Coding Density: 89.24%
  • Codon Table: 11
  • N50: 402,499 bp
  • Contigs: 27
  • Largest Contig: 766,167 bp
  • Assembly Length: 5,277,081 bp
  • Ambiguous Assembly Fraction: 0.011%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package: MIGS.ba.5.0
Biosamplemodel: MIGS.ba
All retrieved samples
Metadata retrieved 4 months ago


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