JSON

Genome sc|0000403

Name

Pantoea haifensis

Database

NCBI Assembly

Accession

GCA_018842655.1

Genomics

Accession
NCBI Assembly:GCA_018842655.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 96.75%
  • Contamination: 1.25%
  • Quality: 90.5
Ribosomal and transfer RNA genes
  • 7 16S rRNAs (up to 100.0%)
  • 7 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
73.0 ×
Source
Other features
  • G+C Content: 51.69%
  • Coding Density: 85.04%
  • Codon Table: 11
  • N50: 3,740,753 bp
  • Contigs: 10
  • Largest Contig: 3,740,753 bp
  • Assembly Length: 4,407,444 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2019-03-24
Location
Not detected
Toponym
Geo Loc Name: Israel: Haifa
Environment
Sample Type: colony
Isolation Source: asphalt
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


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