Genome sc|0000375

Genomics

Accession

INSDC Nucleotide:CP122380

Type

Enrichment Genome

Estimated Quality Metrics

• Completeness: 98.28%
• Contamination: 0.93%
• Quality: 93.61

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

450.0 ×

Source

• BioSample: SAMN30076288

Other features

• G+C Content: 38.1%
• Coding Density: 84.51%
• Codon Table: 11
• N50: 2,152,572 bp
• Contigs: 1
• Largest Contig: 2,152,572 bp
• Assembly Length: 2,152,572 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were evaluated using CheckM (Parks et al., 2015).
Annotation was made using PGAP (Tatusova et al., 2016).
tRNA elements were detected by tRNAscan-SE (Lowe and Eddy, 1997).

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2020-12-23

Location

Lat Lon: 45.330145 N 37.263235 E

Toponym

Geo Loc Name: Russia: Taman Peninsula, Golubitskoye Lake

Environment

Sample Type: metagenomic assembly

Isolation Source: enrichment culture from mud volcano

Env Broad Scale: mud volcano

Env Local Scale: terrestrial mud volcano Golubitskoye Lake

Env Medium: mud

Other

Not detected

Package

Ncbi Submission Package: MIMAG.5.0

Biosamplemodel: MIMAG

All retrieved samples

• SAMN30076288: MIMAG Metagenome-assembled Genome sample from Candidatus Bathyarchaeota archaeon

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Metadata retrieved 4 months ago