Genome sc|0000375


Database

INSDC Nucleotide

Accession

CP122380

Genomics

Accession
INSDC Nucleotide:CP122380
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 98.28%
  • Contamination: 0.93%
  • Quality: 93.61
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
450.0 ×
Source
Other features
  • G+C Content: 38.1%
  • Coding Density: 84.51%
  • Codon Table: 11
  • N50: 2,152,572 bp
  • Contigs: 1
  • Largest Contig: 2,152,572 bp
  • Assembly Length: 2,152,572 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were evaluated using CheckM (Parks et al., 2015).
Annotation was made using PGAP (Tatusova et al., 2016).
tRNA elements were detected by tRNAscan-SE (Lowe and Eddy, 1997).

Automated checks
Complete

Sample Metadata

Date
Collection Date: 2020-12-23
Location
Lat Lon: 45.330145 N 37.263235 E
Toponym
Geo Loc Name: Russia: Taman Peninsula, Golubitskoye Lake
Environment
Sample Type: metagenomic assembly
Isolation Source: enrichment culture from mud volcano
Env Broad Scale: mud volcano
Env Local Scale: terrestrial mud volcano Golubitskoye Lake
Env Medium: mud
Other
Not detected
Package
Ncbi Submission Package: MIMAG.5.0
Biosamplemodel: MIMAG
All retrieved samples

Metadata retrieved 3 months ago


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