Genome sc|0000266

Name

Humimonas hydrogenitrophica^Ts

Database

NCBI Assembly

Accession

GCA_947581615.1

Genomics

Accession

NCBI Assembly:GCA_947581615.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 96.7%
Contamination: 3.3%
Quality: 80.2

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
0 23S rRNAs
tRNAs for 20 amino acids

Source

SRA: SRR5210316

Other features

G+C Content: 71.38%
Coding Density: 91.82%
Codon Table: 11
N50: 52,189 bp
Contigs: 119
Largest Contig: 174,422 bp
Assembly Length: 3,341,153 bp
Ambiguous Assembly Fraction: 0.0%

Submitter comments

Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2014-07-11

Location

Lat Lon: 37.4965 N 122.1329 W

Toponym

Geo Loc Name: USA:South San Francisco, USA

Environment

Isolation Source: Site R2A soil

Gold Ecosystem Classification: Environmental | Terrestrial | Soil | Wetlands | Unclassified

Other

Not detected

Package

Ncbi Submission Package: Metagenome.environmental.1.0

Biosamplemodel: Metagenome or environmental

All retrieved samples

SRS1945371: Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_D1_MG

Metadata retrieved 4 months ago

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