Genome sc|0000266


Database

NCBI Assembly

Accession

GCA_947581615.1

Genomics

Accession
NCBI Assembly:GCA_947581615.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.7%
  • Contamination: 3.3%
  • Quality: 80.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 71.38%
  • Coding Density: 91.82%
  • Codon Table: 11
  • N50: 52,189 bp
  • Contigs: 119
  • Largest Contig: 174,422bp
  • Assembly Length: 3,341,153 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014-07-11
Location
Lat Lon: 37.4965 N 122.1329 W
Toponym
Geo Loc Name: USA:South San Francisco, USA
Environment
Isolation Source: Site R2A soil
Gold Ecosystem Classification: Environmental | Terrestrial | Soil | Wetlands | Unclassified
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved about 2 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license