Genome sc|0000265


Database

NCBI Assembly

Accession

GCA_947581745.1

Genomics

Accession
NCBI Assembly:GCA_947581745.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.21%
  • Contamination: 2.2%
  • Quality: 80.21
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Source
Other features
  • G+C Content: 67.11%
  • Coding Density: 93.13%
  • Codon Table: 11
  • N50: 11,649 bp
  • Contigs: 315
  • Largest Contig: 39,862bp
  • Assembly Length: 2,894,191 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Lat Lon: 38.080353 N 122.108833 W
Toponym
Geo Loc Name: USA: San Francisco Bay, California
Environment
Isolation Source: Wetland
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Wetlands | Unclassified
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved about 2 months ago


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