Genome sc|0000264


Database

NCBI Assembly

Accession

GCA_947581915.1

Genomics

Accession
NCBI Assembly:GCA_947581915.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 3.3%
  • Quality: 79.1
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 69.29%
  • Coding Density: 93.24%
  • Codon Table: 11
  • N50: 101,838 bp
  • Contigs: 79
  • Largest Contig: 254,251bp
  • Assembly Length: 3,616,708 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
 Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA 
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2015-12-22
Location
Lat Lon: 18.832467 S 147.633250 E
Toponym
Geo Loc Name: Australia: Davies Reef
Environment
Isolation Source: marine sponge reef biome
Env Broad Scale: coral reef
Env Local Scale: marine sponge reef biome
Env Medium: Tissue
Other
Host: Ircinia ramosa
Package
Ncbi Submission Package: MIMS.me.host-associated.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 2 months ago


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