JSON

Genome sc|0000020

Name

Elulimicrobium humileTs

Database

NCBI Assembly

Accession

GCA_009919195.1

Genomics

Accession
NCBI Assembly:GCA_009919195.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 78.3%
  • Contamination: 1.9%
  • Quality: 68.8
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 0.0%)
  • tRNAs for 19 amino acids
Sequencing depth
4.57 ×
Source
See all sources
Other features
  • G+C Content: 34.4%
  • Coding Density: 94.07%
  • Codon Table: 11
  • N50: 3,989 bp
  • Contigs: 1,298
  • Largest Contig: 56,370 bp
  • Assembly Length: 3,794,481 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2010-09-24 • 2012-08-05 • 2013-09-08 • 2014-09-24 • 2015-10-04 • 2010-09-17 • 2012-08-01 • 2013-09-06 • 2014-09-27 • 2015-10-05 • 2012-08-02
Location
Lat Lon: 31.66294 N 85.062168 W • 32.664624 N 85.087393 W • 34.261117 N 83.950069 W • 30.743083 N 84.858652 W • 32.933463 N 85.19634 W
Toponym
Geo Loc Name: USA: Chattahoochee River • USA: Lake Eufaula • USA: Lake Harding • USA: Lake Lanier • USA: Lake Seminole • USA: Lake Westpoint
Environment
Sample Type: metagenomic assembly
Env Biome: lake
Isolation Source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014 • Lake Eufaula, USA • Lake Harding, USA • Lake Lanier, USA • Lake Seminole, USA • Lake Westpoint, USA • freshwater lake
Other
Ph: 6.77 • 6.5 • 6.89 • 6 • 8.02 • 6.64 • 8.61 • 6.13 • 5.38 • 7.99 • 9.26 • 7.74 • 6.2 • 6.53 • 7.25
Temp: 31.68 • 31.75 C • 31.5 C • 30.04 C • 28.23 C • 23.42 C • 29.31 C • 31.38 C • 31.68 C • 25.84 C • 24.17 C • 31.18 C • 30.03 C • 31.16 C • 30.37 C • 27.27 C • 23.63 C • 30.7 C • 32.26 C • 26.36 C • 24.28 C
Rel To Oxygen: aerobe
Package
Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved 4 months ago


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