JSON

Genome sc|0001608

Name

Ruminococcus primiciens

Database

NCBI Assembly

Accession

GCA_037465745.1

Genomics

Accession
NCBI Assembly:GCA_037465745.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.95%
  • Contamination: 2.46%
  • Quality: 80.65
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 14 amino acids
Sequencing depth
92.95 ×
Source
Other features
  • G+C Content: 37.5%
  • Coding Density: 87.48%
  • Codon Table: 11
  • N50: 23,482 bp
  • Contigs: 128
  • Largest Contig: 61,525 bp
  • Assembly Length: 2,023,970 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2019-06-05
Location
Lat Lon: 40.4637 N 3.7492 W
Toponym
Geo Loc Name: Spain
Environment
Sample Type: metagenomic assembly
Isolation Source: feces
Other
Host: Homo sapiens
Package
Ncbi Package: MIMAG.6.0
Additional Accessions
SRR5558136
All retrieved samples
Metadata retrieved about 1 month ago


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