JSON

Genome sc|0000150

Name

Kutchimonas denitrificansTs

Database

NCBI Assembly

Accession

GCA_011774835.1

Genomics

Accession
NCBI Assembly:GCA_011774835.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.54%
  • Contamination: 4.4%
  • Quality: 69.54
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 14 amino acids
Source
Other features
  • G+C Content: 66.59%
  • Coding Density: 90.03%
  • Codon Table: 11
  • N50: 91,869 bp
  • Contigs: 149
  • Largest Contig: 205,963 bp
  • Assembly Length: 3,760,514 bp
  • Ambiguous Assembly Fraction: 0.24%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2017-05
Location
Lat Lon: 22.6 N 69.5 E
Toponym
Geo Loc Name: India: Gulf of Kutch
Environment
Isolation Source: Pelagic sediment
Env Broad Scale: marine biome [ENVO:00000428]
Env Local Scale: marine pelagic biome [ENVO:01000023]
Env Medium: deep marine sediment [ENVO:00002113]
Other
Depth: 1-100 cm
Package
Ncbi Submission Package: MIMS.me.sediment.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples
Metadata retrieved 4 months ago


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