Genome sc|0000149


Database

NCBI Assembly

Accession

GCA_023554335.1

Genomics

Accession
NCBI Assembly:GCA_023554335.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.96%
  • Contamination: 3.6%
  • Quality: 75.96
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 17 amino acids
Source
Other features
  • G+C Content: 66.45%
  • Coding Density: 93.41%
  • Codon Table: 11
  • N50: 10,285 bp
  • Contigs: 280
  • Largest Contig: 62,930bp
  • Assembly Length: 2,573,992 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Lat Lon: 38.080353 N 122.108833 W
Toponym
Geo Loc Name: USA: San Francisco Bay, California
Environment
Isolation Source: Wetland
Gold Ecosystem Classification: Environmental | Aquatic | Marine | Wetlands | Unclassified
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples

Metadata retrieved about 2 months ago


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