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cognitis nomina
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Genomes
sc|0000148
JSON
Genome sc|0000148
Name
Carthagonibacter metallireducens
Ts
Database
NCBI Assembly
Accession
GCA_023554445.1
Genomics
Accession
NCBI Assembly:
GCA_023554445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
96.7%
Contamination:
4.4%
Quality:
74.7
Ribosomal and transfer RNA genes
1 16S rRNA (up to 56.0%)
0 23S rRNAs
tRNAs for 18 amino acids
Source
BioSample: SAMN28544686
Other features
G+C Content:
65.49%
Coding Density:
93.26%
Codon Table:
11
N50:
28,327 bp
Contigs:
153
Largest Contig:
129,720 bp
Assembly Length:
2,826,554 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2018-09-02
Location
Lat Lon:
37.75 N 0.78 W
Toponym
Geo Loc Name:
Spain: Mar Menor (Region de Murcia)
Environment
Isolation Source:
marine sediment
Env Broad Scale:
marine sediment
Env Local Scale:
coastal lagoon
Env Medium:
Mud
Other
Depth:
0-4.5 cm
Package
Ncbi Submission Package:
MIMS.me.sediment.5.0
Biosamplemodel:
MIGS/MIMS/MIMARKS.sediment
All retrieved samples
SAMN28544686
: MIMS Environmental/Metagenome sample from marine sediment metagenome
Metadata retrieved
4 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN28544686
×
Keywords: GSC:MIxS;MIMS:5.0
collection_date
2018-09-02
NCBI submission package
MIMS.me.sediment.5.0
depth
0-4.5 cm
organism
marine sediment metagenome
elev
< 2 m
env_broad_scale
marine sediment
geo_loc_name
Spain: Mar Menor (Region de Murcia)
env_medium
Mud
lat_lon
37.75 N 0.78 W
env_local_scale
coastal lagoon
isolation_source
marine sediment
BioSampleModel
MIGS/MIMS/MIMARKS.sediment
ENA-FIRST-PUBLIC
2022-05-19
ENA-LAST-UPDATE
2022-05-20
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