Genome sc|0000148


Database

NCBI Assembly

Accession

GCA_023554445.1

Genomics

Accession
NCBI Assembly:GCA_023554445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.7%
  • Contamination: 4.4%
  • Quality: 74.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 56.0%)
  • 0 23S rRNAs
  • tRNAs for 18 amino acids
Source
Other features
  • G+C Content: 65.49%
  • Coding Density: 93.26%
  • Codon Table: 11
  • N50: 28,327 bp
  • Contigs: 153
  • Largest Contig: 129,720bp
  • Assembly Length: 2,826,554 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2018-09-02
Location
Lat Lon: 37.75 N 0.78 W
Toponym
Geo Loc Name: Spain: Mar Menor (Region de Murcia)
Environment
Isolation Source: marine sediment
Env Broad Scale: marine sediment
Env Local Scale: coastal lagoon
Env Medium: Mud
Other
Depth: 0-4.5 cm
Package
Ncbi Submission Package: MIMS.me.sediment.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment
All retrieved samples

Metadata retrieved about 2 months ago


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