JSON

Genome sc|0001471

Name

Mesorhizobium humile

Database

NCBI Assembly

Accession

GCA_033977215.1

Genomics

Accession
NCBI Assembly:GCA_033977215.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 0.9%
  • Quality: 94.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
230.8 ×
Source
Other features
  • G+C Content: 63.56%
  • Coding Density: 86.53%
  • Codon Table: 11
  • N50: 234,275 bp
  • Contigs: 78
  • Largest Contig: 613,800 bp
  • Assembly Length: 6,750,448 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013
Location
Lat Lon: 31.3831 S 19.0214 E
Toponym
Geo Loc Name: South Africa: Van Rhyns Pass, Western Cape
Environment
Isolation Source: root nodules
Env Broad Scale: Soil
Env Local Scale: Root nodule
Env Medium: Root nodule
Other
Host: Vachellia karroo
Package
Ncbi Submission Package: MIGS.ba.plant-associated.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.plant-associated
All retrieved samples
Metadata retrieved 4 months ago


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