Genome sc|0000147


Database

NCBI Assembly

Accession

GCA_012270965.1

Genomics

Accession
NCBI Assembly:GCA_012270965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.11%
  • Contamination: 3.3%
  • Quality: 73.61
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 73.0%)
  • tRNAs for 20 amino acids
Source
See all sources
Other features
  • G+C Content: 68.94%
  • Coding Density: 90.15%
  • Codon Table: 11
  • N50: 80,204 bp
  • Contigs: 99
  • Largest Contig: 240,648bp
  • Assembly Length: 3,562,629 bp
  • Ambiguous Assembly Fraction: 0.02%
Submitter comments
Genome quality has been evaluated with checkM, presence of 16S rRNA gene was checked with sortmerna and tRNA were identified using tRNAscan
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2013-10-25
Location
Lat Lon: 18.5446 S 146.4881 E
Toponym
Geo Loc Name: Australia: Orpheus Island
Environment
Env Broad Scale: coral reef
Env Local Scale: Tropical coral biome
Env Medium: Tissue
Other
Host: Porites lutea
Package
Ncbi Submission Package: MIMS.me.host-associated.5.0
Biosamplemodel: MIGS/MIMS/MIMARKS.host-associated
All retrieved samples

Metadata retrieved about 1 month ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license