JSON

Genome sc|0000144

Name

Palauibacter ramosifaciens

Database

NCBI Assembly

Accession

GCA_009845855.1

Genomics

Accession
NCBI Assembly:GCA_009845855.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6%
  • Contamination: 3.3%
  • Quality: 79.1
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 68.83%
  • Coding Density: 92.68%
  • Codon Table: 11
  • N50: 56,475 bp
  • Contigs: 120
  • Largest Contig: 158,800 bp
  • Assembly Length: 3,657,233 bp
  • Ambiguous Assembly Fraction: 0.013%
Submitter comments
Genome quality has been evaluated using checkM, 16S rRNA gene presence has been analysed with sortmerna and tRNAscan was used to identify tRNA
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2016-10
Location
Lat Lon: 18.49 S 147.38 E
Toponym
Geo Loc Name: Australia: Great Barrier Reef
Environment
Isolation Source: Sponge tissue
Other
Host: Ircinia ramosa
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved 4 months ago


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